Package | Description |
---|---|
htsjdk.samtools |
Modifier and Type | Method and Description |
---|---|
SAMProgramRecord |
SAMFileHeader.createProgramRecord() |
SAMProgramRecord |
SAMFileHeader.getProgramRecord(java.lang.String pgId) |
Modifier and Type | Method and Description |
---|---|
java.util.List<SAMProgramRecord> |
SAMFileHeader.getProgramRecords() |
Modifier and Type | Method and Description |
---|---|
void |
SAMFileHeader.addProgramRecord(SAMProgramRecord programRecord) |
static void |
SAMUtils.chainSAMProgramRecord(SAMFileHeader header,
SAMProgramRecord program)
Chains
program in front of the first "head" item in the list of
SAMProgramRecords in header . |
boolean |
SAMProgramRecord.equivalent(SAMProgramRecord that) |
void |
SAMRecordSetBuilder.setProgramRecord(SAMProgramRecord programRecord)
Adds the given program record to the header, and assigns the PG tag to any SAMRecords
created after it has been added.
|
Modifier and Type | Method and Description |
---|---|
void |
SAMFileHeader.setProgramRecords(java.util.List<SAMProgramRecord> programRecords)
Replace entire list of program records
|
Constructor and Description |
---|
SAMProgramRecord(java.lang.String id,
SAMProgramRecord srcProgramRecord) |