Package | Description |
---|---|
htsjdk.tribble.index | |
htsjdk.tribble.index.interval | |
htsjdk.tribble.index.linear | |
htsjdk.tribble.index.tabix |
Modifier and Type | Method and Description |
---|---|
java.util.List<Block> |
ChrIndex.getBlocks() |
java.util.List<Block> |
ChrIndex.getBlocks(int start,
int end) |
java.util.List<Block> |
AbstractIndex.getBlocks(java.lang.String chr) |
java.util.List<Block> |
AbstractIndex.getBlocks(java.lang.String chr,
int start,
int end) |
java.util.List<Block> |
Index.getBlocks(java.lang.String chr,
int start,
int end)
Query the index.
|
Modifier and Type | Method and Description |
---|---|
Block |
Interval.getBlock() |
Modifier and Type | Method and Description |
---|---|
java.util.List<Block> |
IntervalTreeIndex.ChrIndex.getBlocks() |
java.util.List<Block> |
IntervalTreeIndex.ChrIndex.getBlocks(int start,
int end) |
Constructor and Description |
---|
Interval(int start,
int end,
Block block) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Block> |
LinearIndex.ChrIndex.getBlocks() |
java.util.List<Block> |
LinearIndex.ChrIndex.getBlocks(int start,
int end) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Block> |
TabixIndex.getBlocks(java.lang.String chr,
int start,
int end) |