Package | Description |
---|---|
htsjdk.samtools |
Modifier and Type | Method and Description |
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SamInputResource |
SamInputResource.index(java.io.File file)
Updates the index to point at the provided resource, then returns itself.
|
SamInputResource |
SamInputResource.index(java.io.InputStream inputStream)
Updates the index to point at the provided resource, then returns itself.
|
SamInputResource |
SamInputResource.index(SeekableStream seekableStream)
Updates the index to point at the provided resource, then returns itself.
|
SamInputResource |
SamInputResource.index(java.net.URL url)
Updates the index to point at the provided resource, then returns itself.
|
static SamInputResource |
SamInputResource.of(java.io.File file)
Creates a
SamInputResource reading from the provided resource, with no index. |
static SamInputResource |
SamInputResource.of(java.io.InputStream inputStream)
Creates a
SamInputResource reading from the provided resource, with no index. |
static SamInputResource |
SamInputResource.of(SeekableStream seekableStream)
Creates a
SamInputResource reading from the provided resource, with no index. |
static SamInputResource |
SamInputResource.of(SRAAccession acc) |
static SamInputResource |
SamInputResource.of(java.lang.String string)
Creates a
SamInputResource from a string specifying *either* a url or a file path |
static SamInputResource |
SamInputResource.of(java.net.URL url)
Creates a
SamInputResource reading from the provided resource, with no index. |
Modifier and Type | Method and Description |
---|---|
abstract SamReader |
SamReaderFactory.open(SamInputResource resource) |
Constructor and Description |
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PrimitiveSamReaderToSamReaderAdapter(SamReader.PrimitiveSamReader p,
SamInputResource resource) |