Package | Description |
---|---|
htsjdk.samtools | |
htsjdk.samtools.sra |
Modifier and Type | Method and Description |
---|---|
protected SRAIterator.RecordRangeInfo |
SRAFileReader.getRecordsRangeInfo() |
static SRAIterator.RecordRangeInfo |
SRAIterator.getRecordsRangeInfo(ngs.ReadCollection run)
Loads record ranges needed for emulating BAM index
|
Constructor and Description |
---|
SRAIndex(SAMFileHeader header,
SRAIterator.RecordRangeInfo recordRangeInfo) |
SRAIterator(SRAAccession accession,
ngs.ReadCollection run,
SAMFileHeader header,
ReferenceCache cachedReferences,
SRAIterator.RecordRangeInfo recordRangeInfo,
java.util.List<Chunk> chunks) |
Constructor and Description |
---|
SRAAlignmentIterator(SRAAccession accession,
ngs.ReadCollection run,
SAMFileHeader header,
ReferenceCache cachedReferences,
SRAIterator.RecordRangeInfo recordRangeInfo,
Chunk chunk) |
SRAUnalignmentIterator(SRAAccession accession,
ngs.ReadCollection run,
SAMFileHeader header,
SRAIterator.RecordRangeInfo recordRangeInfo,
Chunk chunk) |