Package | Description |
---|---|
htsjdk.variant.variantcontext.filter |
Modifier and Type | Class and Description |
---|---|
class |
CompoundFilter
A Predicate on VariantContexts that returns true when either all its sub-predicates are true, or none are false.
|
class |
GenotypeQualityFilter
A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).
|
class |
HeterozygosityFilter
A Predicate on VariantContexts that either returns true at heterozygous sites (invertible to false).
|
class |
PassingVariantFilter
A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).
|
class |
SnpFilter
A Predicate on VariantContexts that returns true at sites that are SNPs
|
Constructor and Description |
---|
FilteringIterator(java.util.Iterator<VariantContext> iterator,
VariantContextFilter filter)
Constructor of an iterator based on the provided iterator and predicate.
|