Package | Description |
---|---|
htsjdk.samtools | |
htsjdk.samtools.cram.build | |
htsjdk.samtools.cram.structure |
Modifier and Type | Method and Description |
---|---|
CramHeader |
CRAMIterator.getCramHeader() |
Modifier and Type | Method and Description |
---|---|
CramHeader |
CramContainerIterator.getCramHeader() |
CramHeader |
CramSpanContainerIterator.getCramHeader() |
static CramHeader |
CramIO.readCramHeader(java.io.InputStream inputStream)
Read CRAM header from the given
InputStream . |
Modifier and Type | Method and Description |
---|---|
static boolean |
CramIO.replaceCramHeader(java.io.File file,
CramHeader newHeader)
Attempt to replace the SAM file header in the CRAM file.
|
static long |
CramIO.writeCramHeader(CramHeader cramHeader,
java.io.OutputStream outputStream)
Writes CRAM header into the specified
OutputStream . |
Modifier and Type | Method and Description |
---|---|
CramHeader |
CramHeader.clone()
Copy the CRAM header into a new
CramHeader object. |