Package | Description |
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htsjdk.variant.vcf |
Modifier and Type | Field and Description |
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protected VCFHeaderVersion |
AbstractVCFCodec.version |
Modifier and Type | Method and Description |
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static VCFHeaderVersion |
VCFHeaderVersion.getHeaderVersion(java.lang.String versionLine) |
static VCFHeaderVersion |
VCFHeaderVersion.toHeaderVersion(java.lang.String version)
get the header version
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static VCFHeaderVersion |
VCFHeaderVersion.valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.
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static VCFHeaderVersion[] |
VCFHeaderVersion.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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boolean |
VCFHeaderVersion.isAtLeastAsRecentAs(VCFHeaderVersion target)
Determines whether this version is at least as recent as a given version
|
protected VCFHeader |
AbstractVCFCodec.parseHeaderFromLines(java.util.List<java.lang.String> headerStrings,
VCFHeaderVersion version)
create a VCF header from a set of header record lines
|
static java.util.Map<java.lang.String,java.lang.String> |
VCFHeaderLineTranslator.parseLine(VCFHeaderVersion version,
java.lang.String valueLine,
java.util.List<java.lang.String> expectedTagOrder) |
VCFHeader |
AbstractVCFCodec.setVCFHeader(VCFHeader header,
VCFHeaderVersion version)
Explicitly set the VCFHeader on this codec.
|
Constructor and Description |
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VCFCompoundHeaderLine(java.lang.String line,
VCFHeaderVersion version,
VCFCompoundHeaderLine.SupportedHeaderLineType lineType)
create a VCF format header line
|
VCFContigHeaderLine(java.lang.String line,
VCFHeaderVersion version,
java.lang.String key,
int contigIndex)
create a VCF contig header line
|
VCFFilterHeaderLine(java.lang.String line,
VCFHeaderVersion version)
create a VCF info header line
|
VCFFormatHeaderLine(java.lang.String line,
VCFHeaderVersion version) |
VCFInfoHeaderLine(java.lang.String line,
VCFHeaderVersion version) |
VCFSimpleHeaderLine(java.lang.String line,
VCFHeaderVersion version,
java.lang.String key,
java.util.List<java.lang.String> expectedTagOrdering)
create a VCF info header line
|