Package | Description |
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htsjdk.variant.variantcontext |
Modifier and Type | Method and Description |
---|---|
static java.util.List<VariantContextUtils.JexlVCMatchExp> |
VariantContextUtils.initializeMatchExps(java.util.List<java.lang.String> names,
java.util.List<java.lang.String> exps)
Method for creating JexlVCMatchExp from input walker arguments names and exps.
|
static java.util.List<VariantContextUtils.JexlVCMatchExp> |
VariantContextUtils.initializeMatchExps(java.util.Map<java.lang.String,java.lang.String> names_and_exps)
Method for creating JexlVCMatchExp from input walker arguments mapping from names to exps.
|
static java.util.List<VariantContextUtils.JexlVCMatchExp> |
VariantContextUtils.initializeMatchExps(java.lang.String[] names,
java.lang.String[] exps)
Method for creating JexlVCMatchExp from input walker arguments names and exps.
|
static java.util.Map<VariantContextUtils.JexlVCMatchExp,java.lang.Boolean> |
VariantContextUtils.match(VariantContext vc,
java.util.Collection<VariantContextUtils.JexlVCMatchExp> exps)
Matches each JexlVCMatchExp exp against the data contained in vc, and returns a map from these
expressions to true (if they matched) or false (if they didn't).
|
static java.util.Map<VariantContextUtils.JexlVCMatchExp,java.lang.Boolean> |
VariantContextUtils.match(VariantContext vc,
Genotype g,
java.util.Collection<VariantContextUtils.JexlVCMatchExp> exps)
Matches each JexlVCMatchExp exp against the data contained in vc/g, and returns a map from these
expressions to true (if they matched) or false (if they didn't).
|
Modifier and Type | Method and Description |
---|---|
static boolean |
VariantContextUtils.match(VariantContext vc,
Genotype g,
VariantContextUtils.JexlVCMatchExp exp)
Returns true if exp match VC/g.
|
static boolean |
VariantContextUtils.match(VariantContext vc,
VariantContextUtils.JexlVCMatchExp exp)
Returns true if exp match VC.
|
Modifier and Type | Method and Description |
---|---|
static java.util.Map<VariantContextUtils.JexlVCMatchExp,java.lang.Boolean> |
VariantContextUtils.match(VariantContext vc,
java.util.Collection<VariantContextUtils.JexlVCMatchExp> exps)
Matches each JexlVCMatchExp exp against the data contained in vc, and returns a map from these
expressions to true (if they matched) or false (if they didn't).
|
static java.util.Map<VariantContextUtils.JexlVCMatchExp,java.lang.Boolean> |
VariantContextUtils.match(VariantContext vc,
Genotype g,
java.util.Collection<VariantContextUtils.JexlVCMatchExp> exps)
Matches each JexlVCMatchExp exp against the data contained in vc/g, and returns a map from these
expressions to true (if they matched) or false (if they didn't).
|