Package | Description |
---|---|
htsjdk.samtools |
Modifier and Type | Class and Description |
---|---|
class |
SAMRecordCoordinateComparator
Comparator for sorting SAMRecords by coordinate.
|
class |
SAMRecordDuplicateComparator
Compares records based on if they should be considered PCR Duplicates (see MarkDuplicates).
|
class |
SAMRecordQueryHashComparator
SAMRecord comparator that provides an ordering based on a hash of the queryname.
|
class |
SAMRecordQueryNameComparator
Comparator for "queryname" ordering of SAMRecords.
|
Modifier and Type | Method and Description |
---|---|
SAMRecordComparator |
SAMFileHeader.SortOrder.getComparatorInstance() |
Modifier and Type | Method and Description |
---|---|
java.lang.Class<? extends SAMRecordComparator> |
SAMFileHeader.SortOrder.getComparator() |