Package | Description |
---|---|
htsjdk.samtools.cram.build | |
htsjdk.samtools.cram.encoding.reader | |
htsjdk.samtools.cram.encoding.writer | |
htsjdk.samtools.cram.structure |
Modifier and Type | Method and Description |
---|---|
CompressionHeader |
CompressionHeaderFactory.build(java.util.List<CramCompressionRecord> records,
SubstitutionMatrix substitutionMatrix,
boolean sorted) |
Modifier and Type | Method and Description |
---|---|
AbstractReader |
DataReaderFactory.buildReader(AbstractReader reader,
BitInputStream bitInputStream,
java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
CompressionHeader header,
int refId) |
Modifier and Type | Method and Description |
---|---|
Writer |
DataWriterFactory.buildWriter(BitOutputStream bitOutputStream,
java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap,
CompressionHeader h,
int refId) |
Modifier and Type | Field and Description |
---|---|
CompressionHeader |
Container.header |