Interface | Description |
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VariantContextFilter |
API for filtering VariantContexts
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Class | Description |
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CompoundFilter |
A Predicate on VariantContexts that returns true when either all its sub-predicates are true, or none are false.
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FilteringIterator |
A filtering iterator for VariantContexts that takes a base iterator and a VariantContextFilter.
|
GenotypeQualityFilter |
A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).
|
HeterozygosityFilter |
A Predicate on VariantContexts that either returns true at heterozygous sites (invertible to false).
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PassingVariantFilter |
A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).
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SnpFilter |
A Predicate on VariantContexts that returns true at sites that are SNPs
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