Package | Description |
---|---|
htsjdk.tribble | |
htsjdk.tribble.bed | |
htsjdk.tribble.gelitext | |
htsjdk.variant.vcf |
Constructor and Description |
---|
TabixFeatureReader(java.lang.String featureFile,
AsciiFeatureCodec codec) |
TabixFeatureReader(java.lang.String featureFile,
java.lang.String indexFile,
AsciiFeatureCodec codec) |
Modifier and Type | Class and Description |
---|---|
class |
BEDCodec
Codec for parsing BED file, as described by UCSC
See https://genome.ucsc.edu/FAQ/FAQformat.html#format1
|
Modifier and Type | Class and Description |
---|---|
class |
GeliTextCodec
Deprecated.
This is deprecated and unsupported.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractVCFCodec |
class |
VCF3Codec
A feature codec for the VCF3 specification, to read older VCF files.
|
class |
VCFCodec
A feature codec for the VCF 4 specification
|